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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16453565_16456367_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16453565 - 16456367
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAACTAACA
Flanking Amino Acid:
DPQMLAFNPRAPYLEIKKQM
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.4
0.62
0.9
69.7
41
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
49.6
-0
2.1
72.64
38.1

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030235
16355864 - 16466398
110535