About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16455084_16456367_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16455084 - 16456367
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAACTAACA
Flanking Amino Acid:
SITSIREMTQAPYLEIKKQM
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.4
0.62
0.9
69.7
41
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
49.6
-0
2.1
72.64
38.1

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000045138
16355864 - 16466398
110535