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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16456436_16456783_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16456436 - 16456783
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATACATATAACT
Flanking Amino Acid:
QDPLAHPLLQWVISSNRSHI
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
68.4
35.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
40.7
-1
3
53.9
45.3
Minor BPS
50.2
0.08
1.8
71.27
38.8

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000030235
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000028247
16355864 - 16466398
110535