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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16462029_16463110_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16462029 - 16463110
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
SSSKGSNTSQSQKKGQQSQF
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
88.9
0.88
0.7
88.2
29.1
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000030235
16355864 - 16466398
110535