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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16465258_16466295_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16465258 - 16466295
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
TDHVCTRFFFVYEDGQVGDT
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000030235
16355864 - 16466398
110535