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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16506867_16510647_F

Intron Information:

Intron Rank:
135616
Intron Class:
major
Intron Phase:
Intron Coordinates:
16506867 - 16510647
Intron Length:
3781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGACAT
U12 Branch Point Sequence:
GTAGCTGAGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
46.8
-0.2
1.3
52.7
43.2
Major PPT
82.6
0.73
0.7
81
24.2
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
40.6
-0.7
2.2
50.89
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046675
16506832 - 16510812
3981