About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16512457_16516548_F

Intron Information:

Intron Rank:
124522
Intron Class:
major
Intron Phase:
Intron Coordinates:
16512457 - 16516548
Intron Length:
4092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.3
38.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
38.3
-1.3
3.5
56.7
47.5
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017149
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033868
16511866 - 16517045
5180