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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1654826_1655873_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1654826 - 1655873
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TAAATCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
RALAFNNKNKELGAVSLDGY
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.3
0.41
1
62.7
42.5
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
DCAF12
Ensembl Gene ID:
ENSAPLG00000007012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044401
1637537 - 1668957
31421
ENSAPLT00000039021
1637537 - 1662583
25047
ENSAPLT00000007284
1637537 - 1668994
31458