About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1656758_1660401_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1656758 - 1660401
Intron Length:
3644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTCCCTGGATT
Flanking Amino Acid:
KSVCSKERGSGIRSVSFYEH
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.55
1
68.2
42.3
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
56
0.27
1.5
69.06
42.3

Associated Gene:

Gene:
DCAF12
Ensembl Gene ID:
ENSAPLG00000007012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039021
1637537 - 1662583
25047
ENSAPLT00000007284
1637537 - 1668994
31458
ENSAPLT00000044401
1637537 - 1668957
31421