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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16634067_16634156_R

Intron Information:

Intron Rank:
145391
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16634067 - 16634156
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGGGAAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
53.1
0.07
1.2
49.2
47.2
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
72.7
0.71
1.6
77.75
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025621
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027362
16633298 - 16634471
1174