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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16727769_16728583_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16727769 - 16728583
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
ATTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTCATT
Flanking Amino Acid:
MGDMGDPPKKKRLISLCVG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
58
46.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
31.9
-2.1
3.3
38.8
40.6
Minor BPS
58.4
0.35
1.7
79.53
37.3

Associated Gene:

Gene:
ISL1
Ensembl Gene ID:
ENSAPLG00000030778
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019108
16726726 - 16737844
11119