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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16732041_16733732_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16732041 - 16733732
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
CCTTCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTCCCTTACAG
Flanking Amino Acid:
LHPSRPLQMAAEPISARQPA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82.7
0.74
0.7
75.9
26.2
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
54.4
0
1.9
62.06
45.4

Associated Gene:

Gene:
ISL1
Ensembl Gene ID:
ENSAPLG00000030778
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019108
16726726 - 16737844
11119