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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1699723_1703484_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1699723 - 1703484
Intron Length:
3762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAACT
Flanking Amino Acid:
PIQQQKQVVQATAEQIRLAQ
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
69.1
0.68
1.7
90.07
33.2

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017199
1699583 - 1812518
112936
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029