Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1705264_1708815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1705264 - 1708815

Intron Length:

3552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTATCCAAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTGTTTCTAATT

Flanking Amino Acid:

NILLEGSSDTTSWETVGGKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

79.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

63.7

0.31

59.6

35.8

Minor 5ss

43.1

-0.8

3.4

65.3

45.9

Minor BPS

62.5

0.47

1.6

79.6

37.1

Associated Gene:

Gene:

UBAP2

Ensembl Gene ID:

ENSAPLG00000006449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017199

1699583 - 1812518

112936

ENSAPLT00000016704

1699583 - 1812518

112936

ENSAPLT00000006718

1699583 - 1812518

112936

ENSAPLT00000040637

1699583 - 1812611

113029