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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1710679_1718758_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1710679 - 1718758

Intron Length:

8080

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TTGCTGTTAAAC

Flanking Amino Acid:

SDRGKRGRGRGFGRGRGRGA

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

83.7

0.76

0.7

77.7

31.1

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

49.2

-0

2.1

64.53

Associated Gene:

Gene:

UBAP2

Ensembl Gene ID:

ENSAPLG00000006449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040637

1699583 - 1812611

113029

ENSAPLT00000006718

1699583 - 1812518

112936