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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17127601_17131882_F

Intron Information:

Intron Rank:
123751
Intron Class:
major
Intron Phase:
Intron Coordinates:
17127601 - 17131882
Intron Length:
4282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATAACAACAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
77.7
0.62
0.8
70.5
35.6
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
43.9
-0.3
2
63.33
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016732
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026062
17127539 - 17133729
6191