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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17132035_17133490_F

Intron Information:

Intron Rank:
123752
Intron Class:
major
Intron Phase:
Intron Coordinates:
17132035 - 17133490
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGACTG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
61.8
42.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
43.4
-0.7
3.1
56.8
41.7
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016732
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026062
17127539 - 17133729
6191