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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17183789_17184634_R

Intron Information:

Intron Rank:
132327
Intron Class:
major
Intron Phase:
Intron Coordinates:
17183789 - 17184634
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.3
0.68
0.9
74.3
40.6
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018443
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035398
17181236 - 17185058
3823