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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1720091_1725152_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1720091 - 1725152

Intron Length:

5062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

TATTGCTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

TATTGCTCCACA

Flanking Amino Acid:

TGQNDADDGTEPTQSGCYLA

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.6

37.4

Major BPS

72.5

0.56

1.2

63.4

Major PPT

75.9

0.58

0.9

69.2

36.7

Minor 5ss

38.4

-1.3

3.1

47.7

42.5

Minor BPS

48.3

-0.1

2.4

68.81

43.4

Associated Gene:

Gene:

UBAP2

Ensembl Gene ID:

ENSAPLG00000006449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040637

1699583 - 1812611

113029

ENSAPLT00000006718

1699583 - 1812518

112936