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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1726446_1731482_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1726446 - 1731482
Intron Length:
5037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAA
Flanking Amino Acid:
EWTAEDWNEDLSETKVFTAS
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.9
74
40.4
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
71.8
0.68
1.3
77.35
32.8

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040637
1699583 - 1812611
113029
ENSAPLT00000017199
1699583 - 1812518
112936
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936