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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17283735_17388561_R

Intron Information:

Intron Rank:
140124
Intron Class:
major
Intron Phase:
Intron Coordinates:
17283735 - 17388561
Intron Length:
104827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
44.4
-0.4
3.5
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018995
17281890 - 17398845
116956