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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1733502_1734223_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1733502 - 1734223
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATTA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCCTTGTCT
Flanking Amino Acid:
AVNSYSPQSLSAVLCSGFGE
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.9
32.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
74.9
0.56
1
73.1
37.2
Minor 5ss
41
-1
3.2
52.8
46.3
Minor BPS
59.2
0.37
3.5
95.37
31.5

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029
ENSAPLT00000017199
1699583 - 1812518
112936