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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1734438_1736411_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1734438 - 1736411
Intron Length:
1974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AACTGCTGACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTTTCCAACT
Flanking Amino Acid:
ITQSSVLSQFDFKSQPEPSP
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
56.3
0.14
1.1
47.8
44.1
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
52.9
0.17
1.9
76.16
40.8

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029
ENSAPLT00000017199
1699583 - 1812518
112936