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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1737372_1738359_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1737372 - 1738359
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
TTACTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATAACTTTTACT
Flanking Amino Acid:
TNNSLYSKSVNDPLNTSLPI
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.1
40.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.8
0.85
0.8
80.7
36.7
Minor 5ss
36.9
-1.5
3.5
48.7
41.9
Minor BPS
60.6
0.41
1.7
75.97
40.5

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017199
1699583 - 1812518
112936
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029