Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17400410_17400796_R

Intron Information:

Intron Rank:

140129

Intron Class:

major

Intron Phase:

Intron Coordinates:

17400410 - 17400796

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TGTATCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

CCACTCTGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.8

82.3

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

68.6

0.42

60.3

41.4

Minor 5ss

33.1

-1.9

2.7

40.7

39.2

Minor BPS

53.2

0.1

1.5

58.11

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044516

17397808 - 17401649

3842