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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1742596_1744866_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1742596 - 1744866
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
AATTTCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTGCATTAATT
Flanking Amino Acid:
LASSSLSQLSSSLSNHQSSL
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.8
0.65
0.8
70.8
40.1
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
67.6
0.63
1.7
83.58
37.4

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017199
1699583 - 1812518
112936
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029