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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17430668_17431735_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17430668 - 17431735
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTATCTTTGACT
Flanking Amino Acid:
LLENRSKFLQVHSSSGHKYA
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.4
0.84
0.7
81.2
36.5
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
75.5
0.88
1.2
83.55
37.7

Associated Gene:

Gene:
PELO
Ensembl Gene ID:
ENSAPLG00000013265
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013808
17429942 - 17432167
2226