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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1744934_1746216_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1744934 - 1746216
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
GTCTCCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGATCCTCATTC
Flanking Amino Acid:
SVLSSSTSHAHTSVENTTSL
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
77.5
0.62
0.8
69.5
36.8
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
53.2
0.08
1.8
64.59
40.9

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936
ENSAPLT00000040637
1699583 - 1812611
113029
ENSAPLT00000017199
1699583 - 1812518
112936