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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1746413_1747659_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1746413 - 1747659
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGCAAT
5'SS Class:
major
3'SS Sequence:
TTTGGTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTCTGTATTT
Flanking Amino Acid:
TTRAAPLVSSGKAPPNLPQG
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
70.2
41.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.9
0.74
0.9
76.6
37.7
Minor 5ss
36.3
-1.5
3
49.2
46.7
Minor BPS
47.4
-0.1
2.2
67.82
43.9

Associated Gene:

Gene:
UBAP2
Ensembl Gene ID:
ENSAPLG00000006449
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040637
1699583 - 1812611
113029
ENSAPLT00000017199
1699583 - 1812518
112936
ENSAPLT00000016704
1699583 - 1812518
112936
ENSAPLT00000006718
1699583 - 1812518
112936