Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17480971_17483587_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17480971 - 17483587

Intron Length:

2617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTGTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

TTTTGTGTATGT

Flanking Amino Acid:

IGGLGGAALFWSRDVAEVNV

Intron Amino Acid Position:

659

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

75.2

40.6

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

67.2

0.39

1.2

71.5

43.2

Minor 5ss

-1.6

3.3

45.6

43.8

Minor BPS

42.3

-0.5

2.6

70.73

46.8

Associated Gene:

Gene:

ITGA1

Ensembl Gene ID:

ENSAPLG00000013272

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046394

17453187 - 17498436

45250

ENSAPLT00000013907

17448274 - 17498436

50163