Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17490522_17491714_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17490522 - 17491714

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACATATG

5'SS Class:

major

3'SS Sequence:

TTTAAATCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGTTCTTACTT

Flanking Amino Acid:

VKYEVGLIFVSVFKEHHVII

Intron Amino Acid Position:

953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

75.3

40.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

77.8

0.63

0.9

70.8

39.6

Minor 5ss

37.6

-1.4

3.1

50.7

45.8

Minor BPS

68.6

0.66

1.6

82.85

39.2

Associated Gene:

Gene:

ITGA1

Ensembl Gene ID:

ENSAPLG00000013272

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046394

17453187 - 17498436

45250

ENSAPLT00000013907

17448274 - 17498436

50163