Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17495390_17496087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17495390 - 17496087

Intron Length:

698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTAAT

U12 Branch Point Sequence:

AAACCATTGACA

Flanking Amino Acid:

LRVWKPTIIKATIHSLTLVV

Intron Amino Acid Position:

1096

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

23.6

Major BPS

73.1

0.57

71.9

31.3

Major PPT

91.9

0.94

0.6

84.9

Minor 5ss

36.8

-1.5

2.7

42.6

38.4

Minor BPS

53.8

0.11

1.6

61.71

37.1

Associated Gene:

Gene:

ITGA1

Ensembl Gene ID:

ENSAPLG00000013272

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046394

17453187 - 17498436

45250

ENSAPLT00000013907

17448274 - 17498436

50163