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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17543414_17543920_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17543414 - 17543920
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTAAACA
Flanking Amino Acid:
GLDIGLNKTQLSIFHKQFWK
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
58.2
0.26
1.7
66.82
40.3

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373