Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17543414_17544578_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17543414 - 17544578

Intron Length:

1165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCATTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TATTTCTTCATT

Flanking Amino Acid:

GLDIGLNKTQVGLIQYANDP

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.2

30.8

Major BPS

84.4

0.85

1.1

34.5

Major PPT

81.4

0.71

0.8

76.8

31.5

Minor 5ss

33.5

-1.9

2.9

40.7

45.5

Minor BPS

68.1

0.65

1.7

84.43

36.6

Associated Gene:

Gene:

ITGA2

Ensembl Gene ID:

ENSAPLG00000020611

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028658

17513969 - 17576341

62373

ENSAPLT00000035891

17513969 - 17576341

62373