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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17551340_17552042_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17551340 - 17552042
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTACTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTA
Flanking Amino Acid:
AIVQSQRGEQIGSYFGSVVC
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.5
0.62
0.9
74.2
40
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
68.7
0.58
1.5
77.09
34

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373
ENSAPLT00000035891
17513969 - 17576341
62373
ENSAPLT00000028658
17513969 - 17576341
62373