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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17552187_17554495_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17552187 - 17554495
Intron Length:
2309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
CCCTTTTTAAAG
Flanking Amino Acid:
GRVYMFSITKGILDQQELLE
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
75.8
0.58
1
77.1
29.1
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
52.5
-0
1.5
50.95
44.1

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373
ENSAPLT00000035891
17513969 - 17576341
62373
ENSAPLT00000028658
17513969 - 17576341
62373