Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17558606_17559703_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17558606 - 17559703

Intron Length:

1098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

ATGTGTTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

ATCAAATGAACA

Flanking Amino Acid:

NCVHDIFSVQEPSDAVNSLS

Intron Amino Acid Position:

669

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

84.1

26.6

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

79.4

0.66

0.9

72.7

41.8

Minor 5ss

-1.9

3.1

41.6

Minor BPS

-0.3

1.9

58.27

40.3

Associated Gene:

Gene:

ITGA2

Ensembl Gene ID:

ENSAPLG00000020611

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039612

17513969 - 17576341

62373

ENSAPLT00000035891

17513969 - 17576341

62373

ENSAPLT00000028658

17513969 - 17576341

62373