About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17564510_17564607_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17564510 - 17564607
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTGTTGAACA
Flanking Amino Acid:
NMAVLSFHALSESNEEQEQD
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.2
0.59
1
73.3
40.9
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
64.5
0.45
1.9
80.01
36.1

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373
ENSAPLT00000035891
17513969 - 17576341
62373
ENSAPLT00000028658
17513969 - 17576341
62373