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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17567615_17568425_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17567615 - 17568425
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGCTAAATT
Flanking Amino Acid:
IGPAFNFSVKVTTGGIPVKM
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
59.7
0.38
2.1
80.78
41.5

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373
ENSAPLT00000035891
17513969 - 17576341
62373
ENSAPLT00000028658
17513969 - 17576341
62373