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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17568537_17569059_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17568537 - 17569059
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAAC
5'SS Class:
major
3'SS Sequence:
ATCCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACCAGTTTAATT
Flanking Amino Acid:
MYLTAIDTDQARGVTCQAQI
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
71.5
33.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
72.7
0.51
0.8
65.3
35.5
Minor 5ss
26.5
-2.7
3.1
33
42.4
Minor BPS
49.3
0.03
1.8
62.04
42.9

Associated Gene:

Gene:
ITGA2
Ensembl Gene ID:
ENSAPLG00000020611
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039612
17513969 - 17576341
62373
ENSAPLT00000035891
17513969 - 17576341
62373
ENSAPLT00000028658
17513969 - 17576341
62373