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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17585615_17586597_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17585615 - 17586597
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
CCTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TACTCTACAGCT
Flanking Amino Acid:
LKAFVPIWKKISFKEPQHRW
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
83.8
0.76
0.7
76.9
31.8
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
46.1
-0.2
2
66.45
44

Associated Gene:

Gene:
MOCS2
Ensembl Gene ID:
ENSAPLG00000013967
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014571
17585234 - 17590382
5149