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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17664463_17678228_R

Intron Information:

Intron Rank:
137230
Intron Class:
major
Intron Phase:
Intron Coordinates:
17664463 - 17678228
Intron Length:
13766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTGGTCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
84.4
0.77
0.7
80
25.3
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
55.8
0.18
1.7
66.04
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021329
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021577
17663097 - 17679527
16431