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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17724254_17724494_R

Intron Information:

Intron Rank:
134037
Intron Class:
major
Intron Phase:
Intron Coordinates:
17724254 - 17724494
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.1
0.7
0.9
74.9
38.8
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
58.2
0.34
2
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019384
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047918
17723984 - 17725505
1522