Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17724577_17725002_R

Intron Information:

Intron Rank:

134038

Intron Class:

major

Intron Phase:

Intron Coordinates:

17724577 - 17725002

Intron Length:

426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAGAT

U12 Branch Point Sequence:

ATACTCCAAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

85.9

23.9

Major BPS

66.8

0.42

1.1

64.4

41.8

Major PPT

79.5

0.66

0.8

76.7

31.9

Minor 5ss

29.7

-2.3

39.4

46.1

Minor BPS

46.8

-0.2

1.9

59.71

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019384

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047918

17723984 - 17725505

1522