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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17731217_17731540_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17731217 - 17731540
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GGTTACTGAAGG
Flanking Amino Acid:
GGAPNCIPCKETCENVDCGP
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
76.9
0.6
0.9
77.2
31.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
47.6
-0.3
2
55.32
45

Associated Gene:

Gene:
FST
Ensembl Gene ID:
ENSAPLG00000014294
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014905
17728979 - 17735165
6187