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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17731760_17732119_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17731760 - 17732119
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
ATCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GCTCCCCTAATT
Flanking Amino Acid:
LEVQYQGKCKKTCRDVLCPG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.1
0.77
0.8
81.9
33.8
Minor 5ss
44.1
-0.6
3.1
57.5
41.6
Minor BPS
60.6
0.41
1.7
75.17
41.4

Associated Gene:

Gene:
FST
Ensembl Gene ID:
ENSAPLG00000014294
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014905
17728979 - 17735165
6187