About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17732345_17733409_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17732345 - 17733409
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGTATATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTACCT
Flanking Amino Acid:
IGLAYEGKCIKAKSCEDIQC
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.1
0.61
0.9
74.5
40.2
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
65.8
0.57
1.8
86.76
38.6

Associated Gene:

Gene:
FST
Ensembl Gene ID:
ENSAPLG00000014294
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014905
17728979 - 17735165
6187