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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17759049_17786112_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17759049 - 17786112
Intron Length:
27064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CATTTTTTAACT
Flanking Amino Acid:
SIKFILELKAWSLSTSTWRL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.9
0.52
0.9
66.5
34.2
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
76.9
0.92
1.1
84.25
36.7

Associated Gene:

Gene:
NDUFS4
Ensembl Gene ID:
ENSAPLG00000014315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033865
17758969 - 17810181
51213