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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17769846_17802819_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17769846 - 17802819
Intron Length:
32974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCCTTTTTAACA
Flanking Amino Acid:
RFNRERKTFKDITSLTGVPD
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.9
0.7
0.9
75.8
38.1
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
73.2
0.72
1.2
73.92
38.7

Associated Gene:

Gene:
NDUFS4
Ensembl Gene ID:
ENSAPLG00000014315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045599
17763691 - 17810181
46491