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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_17786192_17796793_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17786192 - 17796793
Intron Length:
10602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTACTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTCTATTACT
Flanking Amino Acid:
MKNWTQNVNTQLG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
80.6
0.69
0.9
74
35.9
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
65.4
0.57
1.9
89.21
35

Associated Gene:

Gene:
NDUFS4
Ensembl Gene ID:
ENSAPLG00000014315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039079
17769768 - 17810181
40414